Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 AF238378.1-201ENST00000526806 358 ntBASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 AC148477.5-201ENST00000625164 1645 ntBASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 AC139713.2-201ENST00000641328 2723 ntBASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 CROCCP2-202ENST00000412962 2773 ntBASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CUEDC1Q9NWM3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 HLA-A-201ENST00000376802 1334 ntBASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 AC003669.1-201ENST00000334569 611 ntBASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 SAPCD2P3-201ENST00000455031 850 ntBASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 MTDHP3-201ENST00000594186 672 ntBASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 AC046185.3-201ENST00000623228 1824 ntBASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.82■□□□□ 0.28
CUEDC1Q9NWM3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 AC009336.1-201ENST00000608941 1553 ntBASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 AC008608.2-201ENST00000606089 416 ntBASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 AC004817.3-201ENST00000602957 2129 ntBASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CUEDC1Q9NWM3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 AC106820.2-201ENST00000563775 3264 ntBASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CUEDC1Q9NWM3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms