Protein–RNA interactions for Protein: Q9NQC3

RTN4, Reticulon-4, humanhuman

Known RBP Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4Q9NQC3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN4Q9NQC3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 KATNBL1P4-201ENST00000503545 918 ntBASIC20.58■□□□□ 0.89
RTN4Q9NQC3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.58■□□□□ 0.89
RTN4Q9NQC3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 POLL-206ENST00000370172 2308 ntTSL 2 BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.58■□□□□ 0.88
RTN4Q9NQC3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 AC233263.1-201ENST00000578059 224 ntBASIC20.57■□□□□ 0.88
RTN4Q9NQC3 AC069544.1-201ENST00000609399 999 ntBASIC20.57■□□□□ 0.88
RTN4Q9NQC3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN4Q9NQC3 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
RTN4Q9NQC3 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms