Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 SIGLEC16-201ENST00000599858 1437 ntBASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 LTB4R2-202ENST00000528054 3092 ntBASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 MRPL3P1-201ENST00000400109 1033 ntBASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 SIGLEC30P-201ENST00000455569 941 ntBASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 MTDHP4-201ENST00000600287 670 ntBASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AC073592.4-201ENST00000623827 446 ntBASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AL022326.1-202ENST00000641533 845 ntBASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD1Q96NR3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 AC133963.1-201ENST00000504166 1679 ntBASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 AC009336.1-201ENST00000608941 1553 ntBASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 FDX1P1-201ENST00000449115 551 ntBASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PTCHD1Q96NR3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.39■□□□□ 0.22
PTCHD1Q96NR3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PTCHD1Q96NR3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 AC148477.5-201ENST00000625164 1645 ntBASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 SLC25A6P4-201ENST00000586535 553 ntBASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 AL139327.4-201ENST00000612362 153 ntBASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 AL773604.1-201ENST00000617417 272 ntBASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms