Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 NEFHP1-201ENST00000412845 2629 ntBASIC17.38■□□□□ 0.37
HMGB4Q8WW32 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB4Q8WW32 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 AL513480.1-201ENST00000451731 511 ntBASIC17.37■□□□□ 0.37
HMGB4Q8WW32 AC004449.1-201ENST00000564240 433 ntBASIC17.37■□□□□ 0.37
HMGB4Q8WW32 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 AC004835.2-201ENST00000603762 682 ntBASIC17.37■□□□□ 0.37
HMGB4Q8WW32 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB4Q8WW32 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 AC046185.3-201ENST00000623228 1824 ntBASIC17.36■□□□□ 0.37
HMGB4Q8WW32 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 MIR770-201ENST00000390219 98 ntBASIC17.36■□□□□ 0.37
HMGB4Q8WW32 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB4Q8WW32 KRT18P55-202ENST00000578578 1546 ntBASIC17.36■□□□□ 0.37
HMGB4Q8WW32 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AL139400.1-201ENST00000366220 510 ntBASIC17.35■□□□□ 0.37
HMGB4Q8WW32 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB4Q8WW32 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms