Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.86■□□□□ 0.61
VPS52Q8N1B4 AC108751.1-201ENST00000490852 363 ntBASIC18.86■□□□□ 0.61
VPS52Q8N1B4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 AP001160.2-201ENST00000596071 487 ntBASIC18.86■□□□□ 0.61
VPS52Q8N1B4 AC064836.3-201ENST00000607928 673 ntBASIC18.86■□□□□ 0.61
VPS52Q8N1B4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 SIRPAP1-201ENST00000448467 1770 ntBASIC18.86■□□□□ 0.61
VPS52Q8N1B4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS52Q8N1B4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 DUTP2-201ENST00000519164 463 ntBASIC18.85■□□□□ 0.61
VPS52Q8N1B4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS52Q8N1B4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 AC004967.1-201ENST00000453589 447 ntBASIC18.84■□□□□ 0.61
VPS52Q8N1B4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 AL589182.2-201ENST00000619332 1049 ntBASIC18.84■□□□□ 0.61
VPS52Q8N1B4 AC079781.4-201ENST00000641908 219 ntBASIC18.84■□□□□ 0.61
VPS52Q8N1B4 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS52Q8N1B4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms