Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
ATL3Q6DD88 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.83■□□□□ 0.76
ATL3Q6DD88 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATL3Q6DD88 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 GPR89P-201ENST00000407924 1495 ntBASIC19.82■□□□□ 0.76
ATL3Q6DD88 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.82■□□□□ 0.76
ATL3Q6DD88 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATL3Q6DD88 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
ATL3Q6DD88 FRMD8P1-201ENST00000440433 1524 ntBASIC19.81■□□□□ 0.76
ATL3Q6DD88 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 AC078925.2-201ENST00000624013 1973 ntBASIC19.81■□□□□ 0.76
ATL3Q6DD88 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.81■□□□□ 0.76
ATL3Q6DD88 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 AC092068.3-201ENST00000587894 2016 ntBASIC19.81■□□□□ 0.76
ATL3Q6DD88 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATL3Q6DD88 AC132938.5-201ENST00000624980 1813 ntBASIC19.81■□□□□ 0.76
ATL3Q6DD88 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
ATL3Q6DD88 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATL3Q6DD88 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms