Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A4P53420 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.43■□□□□ 0.54
COL4A4P53420 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.43■□□□□ 0.54
COL4A4P53420 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A4P53420 OR8S1-201ENST00000310194 1080 ntBASIC18.43■□□□□ 0.54
COL4A4P53420 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A4P53420 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL4A4P53420 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A4P53420 AC055876.3-201ENST00000431496 288 ntBASIC18.43■□□□□ 0.54
COL4A4P53420 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL4A4P53420 AP005018.1-201ENST00000525475 301 ntBASIC18.43■□□□□ 0.54
COL4A4P53420 AC140878.1-201ENST00000565277 250 ntBASIC18.43■□□□□ 0.54
COL4A4P53420 AC138649.4-201ENST00000612222 287 ntBASIC18.43■□□□□ 0.54
COL4A4P53420 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.43■□□□□ 0.54
COL4A4P53420 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A4P53420 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL4A4P53420 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
COL4A4P53420 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A4P53420 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL4A4P53420 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A4P53420 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A4P53420 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A4P53420 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL4A4P53420 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A4P53420 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A4P53420 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
COL4A4P53420 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A4P53420 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A4P53420 FAM58DP-201ENST00000428076 619 ntBASIC18.42■□□□□ 0.54
COL4A4P53420 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.42■□□□□ 0.54
COL4A4P53420 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A4P53420 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 AC068880.1-201ENST00000507289 2297 ntBASIC18.42■□□□□ 0.54
COL4A4P53420 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A4P53420 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A4P53420 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.42■□□□□ 0.54
COL4A4P53420 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A4P53420 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A4P53420 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
COL4A4P53420 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A4P53420 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
COL4A4P53420 FO538757.1-201ENST00000623083 1397 ntBASIC18.42■□□□□ 0.54
COL4A4P53420 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 GK-202ENST00000378941 458 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A4P53420 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
COL4A4P53420 HLA-V-201ENST00000429037 534 ntBASIC18.41■□□□□ 0.54
COL4A4P53420 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A4P53420 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL4A4P53420 RN7SL589P-201ENST00000481268 310 ntBASIC18.41■□□□□ 0.54
COL4A4P53420 AC002558.1-201ENST00000488906 803 ntBASIC18.41■□□□□ 0.54
COL4A4P53420 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A4P53420 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A4P53420 LINC02560-201ENST00000596379 459 ntBASIC18.41■□□□□ 0.54
COL4A4P53420 AC116407.2-201ENST00000613639 860 ntBASIC18.41■□□□□ 0.54
COL4A4P53420 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
COL4A4P53420 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
COL4A4P53420 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
COL4A4P53420 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A4P53420 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A4P53420 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A4P53420 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A4P53420 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A4P53420 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.41■□□□□ 0.54
COL4A4P53420 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A4P53420 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL4A4P53420 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A4P53420 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.41■□□□□ 0.54
COL4A4P53420 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A4P53420 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A4P53420 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A4P53420 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL4A4P53420 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
COL4A4P53420 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A4P53420 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
COL4A4P53420 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A4P53420 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms