Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC20.29■□□□□ 0.84
MRE11P49959 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.29■□□□□ 0.84
MRE11P49959 FAM207BP-201ENST00000447172 505 ntBASIC20.29■□□□□ 0.84
MRE11P49959 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.29■□□□□ 0.84
MRE11P49959 DUTP2-201ENST00000519164 463 ntBASIC20.29■□□□□ 0.84
MRE11P49959 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.29■□□□□ 0.84
MRE11P49959 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.29■□□□□ 0.84
MRE11P49959 CR769767.2-201ENST00000622735 460 ntBASIC20.29■□□□□ 0.84
MRE11P49959 LINC01451-201ENST00000623792 534 ntBASIC20.29■□□□□ 0.84
MRE11P49959 AL121956.5-201ENST00000625261 221 ntBASIC20.29■□□□□ 0.84
MRE11P49959 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MRE11P49959 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC20.29■□□□□ 0.84
MRE11P49959 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
MRE11P49959 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.29■□□□□ 0.84
MRE11P49959 AC009102.3-201ENST00000623118 1491 ntBASIC20.29■□□□□ 0.84
MRE11P49959 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
MRE11P49959 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.29■□□□□ 0.84
MRE11P49959 LYSMD4-203ENST00000378904 2122 ntBASIC20.29■□□□□ 0.84
MRE11P49959 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MRE11P49959 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 MYB-201ENST00000316528 3571 ntTSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.28■□□□□ 0.84
MRE11P49959 MYB-241ENST00000616088 3573 ntTSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC20.28■□□□□ 0.84
MRE11P49959 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.28■□□□□ 0.84
MRE11P49959 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 MIR564-202ENST00000385049 94 ntBASIC20.28■□□□□ 0.84
MRE11P49959 ECEL1P2-202ENST00000465689 757 ntBASIC20.28■□□□□ 0.84
MRE11P49959 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
MRE11P49959 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.28■□□□□ 0.84
MRE11P49959 C1QL1P1-201ENST00000568105 661 ntBASIC20.28■□□□□ 0.84
MRE11P49959 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.28■□□□□ 0.84
MRE11P49959 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC20.28■□□□□ 0.84
MRE11P49959 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
MRE11P49959 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC20.28■□□□□ 0.84
MRE11P49959 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MRE11P49959 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.28■□□□□ 0.84
MRE11P49959 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC20.27■□□□□ 0.84
MRE11P49959 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC20.27■□□□□ 0.84
MRE11P49959 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.84
MRE11P49959 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.27■□□□□ 0.84
MRE11P49959 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.27■□□□□ 0.84
MRE11P49959 RNF152P1-201ENST00000397754 604 ntBASIC20.27■□□□□ 0.84
MRE11P49959 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
MRE11P49959 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.27■□□□□ 0.84
MRE11P49959 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.27■□□□□ 0.84
MRE11P49959 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MRE11P49959 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC20.27■□□□□ 0.84
MRE11P49959 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
MRE11P49959 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MRE11P49959 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
MRE11P49959 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MRE11P49959 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.27■□□□□ 0.83
MRE11P49959 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
MRE11P49959 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.26■□□□□ 0.83
MRE11P49959 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms