Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.26□□□□□ -0.13
CDX1P47902 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC14.26□□□□□ -0.13
CDX1P47902 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.26□□□□□ -0.13
CDX1P47902 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.26□□□□□ -0.13
CDX1P47902 AL121672.3-201ENST00000608644 468 ntBASIC14.26□□□□□ -0.13
CDX1P47902 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.26□□□□□ -0.13
CDX1P47902 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 AC138028.4-201ENST00000564984 1845 ntBASIC14.26□□□□□ -0.13
CDX1P47902 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CDX1P47902 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.26□□□□□ -0.13
CDX1P47902 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CDX1P47902 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.25□□□□□ -0.13
CDX1P47902 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.25□□□□□ -0.13
CDX1P47902 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.25□□□□□ -0.13
CDX1P47902 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.25□□□□□ -0.13
CDX1P47902 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CDX1P47902 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.25□□□□□ -0.13
CDX1P47902 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.25□□□□□ -0.13
CDX1P47902 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.25□□□□□ -0.13
CDX1P47902 BX276092.5-203ENST00000456199 560 ntBASIC14.25□□□□□ -0.13
CDX1P47902 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.25□□□□□ -0.13
CDX1P47902 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CDX1P47902 AC008687.5-201ENST00000593746 558 ntBASIC14.25□□□□□ -0.13
CDX1P47902 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDX1P47902 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CDX1P47902 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 TSPY26P-202ENST00000565928 3884 ntBASIC14.25□□□□□ -0.13
CDX1P47902 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDX1P47902 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.24□□□□□ -0.13
CDX1P47902 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.24□□□□□ -0.13
CDX1P47902 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 BAALC-202ENST00000306391 243 ntTSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 BAALC-204ENST00000330955 222 ntTSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 MIR149-201ENST00000384879 89 ntBASIC14.24□□□□□ -0.13
CDX1P47902 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.24□□□□□ -0.13
CDX1P47902 KRT18P48-201ENST00000434763 852 ntBASIC14.24□□□□□ -0.13
CDX1P47902 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.24□□□□□ -0.13
CDX1P47902 KRT8P26-201ENST00000534154 1276 ntBASIC14.24□□□□□ -0.13
CDX1P47902 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.24□□□□□ -0.13
CDX1P47902 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 AC024563.2-201ENST00000603282 481 ntBASIC14.24□□□□□ -0.13
CDX1P47902 AC093458.2-201ENST00000623150 629 ntBASIC14.24□□□□□ -0.13
CDX1P47902 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 MYLKP1-201ENST00000509077 1580 ntBASIC14.24□□□□□ -0.13
CDX1P47902 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
CDX1P47902 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.24□□□□□ -0.13
CDX1P47902 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDX1P47902 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms