Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
COL4A5P29400 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A5P29400 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A5P29400 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A5P29400 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A5P29400 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A5P29400 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A5P29400 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.62■□□□□ 0.89
COL4A5P29400 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A5P29400 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A5P29400 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.61■□□□□ 0.89
COL4A5P29400 NME2P1-201ENST00000426182 414 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 U91328.1-201ENST00000437528 223 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A5P29400 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A5P29400 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A5P29400 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COL4A5P29400 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A5P29400 AC012569.1-201ENST00000591191 1524 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
COL4A5P29400 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A5P29400 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 MIR346-201ENST00000362234 95 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.61■□□□□ 0.89
COL4A5P29400 SPTLC1P1-201ENST00000447199 261 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A5P29400 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.61■□□□□ 0.89
COL4A5P29400 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A5P29400 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A5P29400 CR383656.12-201ENST00000549567 513 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A5P29400 AC027307.2-201ENST00000591252 911 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
COL4A5P29400 AL590560.3-201ENST00000623350 461 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 AC008267.7-201ENST00000624570 1194 ntBASIC20.61■□□□□ 0.89
COL4A5P29400 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
COL4A5P29400 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.6■□□□□ 0.89
COL4A5P29400 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A5P29400 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL4A5P29400 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.6■□□□□ 0.89
COL4A5P29400 AL031055.1-201ENST00000606362 631 ntBASIC20.6■□□□□ 0.89
COL4A5P29400 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
COL4A5P29400 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A5P29400 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A5P29400 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
COL4A5P29400 NARF-206ENST00000457415 1668 ntTSL 5 BASIC20.59■□□□□ 0.89
COL4A5P29400 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A5P29400 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.59■□□□□ 0.89
COL4A5P29400 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.59■□□□□ 0.89
COL4A5P29400 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.59■□□□□ 0.89
COL4A5P29400 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL4A5P29400 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A5P29400 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A5P29400 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A5P29400 AC016027.1-202ENST00000607927 1699 ntBASIC20.59■□□□□ 0.89
COL4A5P29400 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A5P29400 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A5P29400 LINC00304-203ENST00000565008 1864 ntBASIC20.59■□□□□ 0.89
COL4A5P29400 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A5P29400 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.58■□□□□ 0.89
COL4A5P29400 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A5P29400 AC010336.2-201ENST00000564226 506 ntBASIC20.58■□□□□ 0.89
COL4A5P29400 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.58■□□□□ 0.89
COL4A5P29400 AC073592.8-201ENST00000624126 511 ntBASIC20.58■□□□□ 0.89
COL4A5P29400 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A5P29400 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A5P29400 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A5P29400 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A5P29400 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A5P29400 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A5P29400 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
COL4A5P29400 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A5P29400 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A5P29400 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.58■□□□□ 0.88
COL4A5P29400 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A5P29400 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A5P29400 FLJ13224-201ENST00000313737 1514 ntBASIC20.58■□□□□ 0.88
COL4A5P29400 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A5P29400 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
COL4A5P29400 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A5P29400 AC142381.1-201ENST00000426099 345 ntBASIC20.58■□□□□ 0.88
COL4A5P29400 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.58■□□□□ 0.88
COL4A5P29400 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms