Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH3P20585 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH3P20585 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MSH3P20585 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH3P20585 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH3P20585 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
MSH3P20585 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH3P20585 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 AC008608.2-201ENST00000606089 416 ntBASIC17.32■□□□□ 0.36
MSH3P20585 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
MSH3P20585 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
MSH3P20585 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH3P20585 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH3P20585 AC139713.2-201ENST00000641328 2723 ntBASIC17.32■□□□□ 0.36
MSH3P20585 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH3P20585 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH3P20585 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MSH3P20585 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
MSH3P20585 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
MSH3P20585 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MSH3P20585 AC132938.5-201ENST00000624980 1813 ntBASIC17.31■□□□□ 0.36
MSH3P20585 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.31■□□□□ 0.36
MSH3P20585 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.31■□□□□ 0.36
MSH3P20585 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
MSH3P20585 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.31■□□□□ 0.36
MSH3P20585 AKR1C7P-201ENST00000305623 895 ntBASIC17.31■□□□□ 0.36
MSH3P20585 AC004870.1-201ENST00000315132 882 ntBASIC17.31■□□□□ 0.36
MSH3P20585 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.31■□□□□ 0.36
MSH3P20585 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.31■□□□□ 0.36
MSH3P20585 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.31■□□□□ 0.36
MSH3P20585 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.31■□□□□ 0.36
MSH3P20585 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.31■□□□□ 0.36
MSH3P20585 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.31■□□□□ 0.36
MSH3P20585 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH3P20585 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
MSH3P20585 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.31■□□□□ 0.36
MSH3P20585 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
MSH3P20585 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 AL023806.1-201ENST00000603994 1649 ntBASIC17.3■□□□□ 0.36
MSH3P20585 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.3■□□□□ 0.36
MSH3P20585 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.3■□□□□ 0.36
MSH3P20585 EMBP1-201ENST00000458200 901 ntBASIC17.3■□□□□ 0.36
MSH3P20585 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.3■□□□□ 0.36
MSH3P20585 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.3■□□□□ 0.36
MSH3P20585 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.3■□□□□ 0.36
MSH3P20585 RN7SL510P-201ENST00000581311 263 ntBASIC17.3■□□□□ 0.36
MSH3P20585 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 LYSMD4-203ENST00000378904 2122 ntBASIC17.3■□□□□ 0.36
MSH3P20585 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
MSH3P20585 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
MSH3P20585 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.3■□□□□ 0.36
MSH3P20585 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.3■□□□□ 0.36
MSH3P20585 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MSH3P20585 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms