Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.53■□□□□ 0.4
VIMP08670 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
VIMP08670 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 LINC02012-201ENST00000608206 1725 ntBASIC17.52■□□□□ 0.4
VIMP08670 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.52■□□□□ 0.4
VIMP08670 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
VIMP08670 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
VIMP08670 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.52■□□□□ 0.4
VIMP08670 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.52■□□□□ 0.4
VIMP08670 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.52■□□□□ 0.4
VIMP08670 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.52■□□□□ 0.4
VIMP08670 AC104771.1-201ENST00000603335 964 ntBASIC17.52■□□□□ 0.4
VIMP08670 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
VIMP08670 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.52■□□□□ 0.4
VIMP08670 NORAD-201ENST00000565493 5339 ntBASIC17.52■□□□□ 0.4
VIMP08670 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
VIMP08670 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VIMP08670 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
VIMP08670 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VIMP08670 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VIMP08670 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
VIMP08670 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VIMP08670 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.52■□□□□ 0.39
VIMP08670 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VIMP08670 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.51■□□□□ 0.39
VIMP08670 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.51■□□□□ 0.39
VIMP08670 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.51■□□□□ 0.39
VIMP08670 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VIMP08670 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VIMP08670 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.51■□□□□ 0.39
VIMP08670 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.51■□□□□ 0.39
VIMP08670 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.51■□□□□ 0.39
VIMP08670 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.51■□□□□ 0.39
VIMP08670 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.51■□□□□ 0.39
VIMP08670 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.51■□□□□ 0.39
VIMP08670 AC110285.5-201ENST00000611501 352 ntBASIC17.51■□□□□ 0.39
VIMP08670 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VIMP08670 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VIMP08670 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.51■□□□□ 0.39
VIMP08670 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.51■□□□□ 0.39
VIMP08670 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VIMP08670 AC092053.1-201ENST00000605787 1936 ntBASIC17.51■□□□□ 0.39
VIMP08670 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
VIMP08670 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VIMP08670 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.5■□□□□ 0.39
VIMP08670 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VIMP08670 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.5■□□□□ 0.39
VIMP08670 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 AC124016.1-201ENST00000609552 612 ntBASIC17.5■□□□□ 0.39
VIMP08670 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms