Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC20.09■□□□□ 0.81
COL2A1P02458 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.09■□□□□ 0.81
COL2A1P02458 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.09■□□□□ 0.81
COL2A1P02458 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.09■□□□□ 0.81
COL2A1P02458 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL2A1P02458 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL2A1P02458 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL2A1P02458 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL2A1P02458 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL2A1P02458 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC20.09■□□□□ 0.81
COL2A1P02458 AC079140.1-201ENST00000508039 487 ntBASIC20.09■□□□□ 0.81
COL2A1P02458 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.09■□□□□ 0.81
COL2A1P02458 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.09■□□□□ 0.81
COL2A1P02458 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL2A1P02458 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.09■□□□□ 0.81
COL2A1P02458 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
COL2A1P02458 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.09■□□□□ 0.81
COL2A1P02458 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 AC012569.1-201ENST00000591191 1524 ntBASIC20.08■□□□□ 0.81
COL2A1P02458 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 SLC22A20-204ENST00000530038 1673 ntBASIC20.08■□□□□ 0.81
COL2A1P02458 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
COL2A1P02458 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 TFAMP1-201ENST00000412727 736 ntBASIC20.08■□□□□ 0.81
COL2A1P02458 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.08■□□□□ 0.81
COL2A1P02458 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.08■□□□□ 0.81
COL2A1P02458 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 AC243562.1-201ENST00000560672 389 ntBASIC20.08■□□□□ 0.81
COL2A1P02458 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC20.08■□□□□ 0.81
COL2A1P02458 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL2A1P02458 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC20.08■□□□□ 0.81
COL2A1P02458 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC20.08■□□□□ 0.81
COL2A1P02458 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL2A1P02458 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.08■□□□□ 0.8
COL2A1P02458 TOP3BP1-201ENST00000420768 1380 ntBASIC20.08■□□□□ 0.8
COL2A1P02458 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL2A1P02458 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.08■□□□□ 0.8
COL2A1P02458 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL2A1P02458 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC20.08■□□□□ 0.8
COL2A1P02458 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL2A1P02458 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.07■□□□□ 0.8
COL2A1P02458 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 RNU1-129P-201ENST00000384064 167 ntBASIC20.07■□□□□ 0.8
COL2A1P02458 AL671277.1-201ENST00000429656 993 ntBASIC20.07■□□□□ 0.8
COL2A1P02458 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.07■□□□□ 0.8
COL2A1P02458 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.07■□□□□ 0.8
COL2A1P02458 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.07■□□□□ 0.8
COL2A1P02458 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.07■□□□□ 0.8
COL2A1P02458 SPCS2P1-201ENST00000561636 679 ntBASIC20.07■□□□□ 0.8
COL2A1P02458 U1.21-201ENST00000580816 167 ntBASIC20.07■□□□□ 0.8
COL2A1P02458 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
COL2A1P02458 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
COL2A1P02458 LINC00628-201ENST00000628516 1289 ntBASIC20.07■□□□□ 0.8
COL2A1P02458 AC084121.4-201ENST00000641598 221 ntBASIC20.07■□□□□ 0.8
COL2A1P02458 AF228730.8-201ENST00000642140 221 ntBASIC20.07■□□□□ 0.8
COL2A1P02458 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.07■□□□□ 0.8
COL2A1P02458 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.07■□□□□ 0.8
COL2A1P02458 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL2A1P02458 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.07■□□□□ 0.8
COL2A1P02458 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
COL2A1P02458 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.06■□□□□ 0.8
COL2A1P02458 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC20.06■□□□□ 0.8
COL2A1P02458 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 SLBP-205ENST00000488267 987 ntTSL 2 BASIC20.06■□□□□ 0.8
COL2A1P02458 AC069335.1-201ENST00000489972 472 ntBASIC20.06■□□□□ 0.8
COL2A1P02458 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.06■□□□□ 0.8
COL2A1P02458 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC20.06■□□□□ 0.8
COL2A1P02458 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
COL2A1P02458 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL2A1P02458 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.06■□□□□ 0.8
COL2A1P02458 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.06■□□□□ 0.8
COL2A1P02458 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL2A1P02458 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms