Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CLPTM1O96005 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.47■□□□□ 0.23
CLPTM1O96005 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.47■□□□□ 0.23
CLPTM1O96005 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
CLPTM1O96005 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.47■□□□□ 0.23
CLPTM1O96005 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.47■□□□□ 0.23
CLPTM1O96005 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLPTM1O96005 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CLPTM1O96005 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.46■□□□□ 0.23
CLPTM1O96005 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CLPTM1O96005 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.46■□□□□ 0.23
CLPTM1O96005 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.46■□□□□ 0.23
CLPTM1O96005 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CLPTM1O96005 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 FAM207BP-201ENST00000447172 505 ntBASIC16.46■□□□□ 0.23
CLPTM1O96005 AC097488.1-201ENST00000507834 756 ntBASIC16.46■□□□□ 0.23
CLPTM1O96005 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.46■□□□□ 0.23
CLPTM1O96005 SLC25A1P4-201ENST00000567977 778 ntBASIC16.46■□□□□ 0.23
CLPTM1O96005 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.46■□□□□ 0.23
CLPTM1O96005 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.46■□□□□ 0.23
CLPTM1O96005 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.46■□□□□ 0.23
CLPTM1O96005 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.46■□□□□ 0.23
CLPTM1O96005 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.46■□□□□ 0.23
CLPTM1O96005 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.46■□□□□ 0.23
CLPTM1O96005 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
CLPTM1O96005 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLPTM1O96005 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLPTM1O96005 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLPTM1O96005 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.45■□□□□ 0.22
CLPTM1O96005 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CLPTM1O96005 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
CLPTM1O96005 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.45■□□□□ 0.22
CLPTM1O96005 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CLPTM1O96005 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CLPTM1O96005 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 AP000593.1-201ENST00000393668 712 ntBASIC16.45■□□□□ 0.22
CLPTM1O96005 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.45■□□□□ 0.22
CLPTM1O96005 AP000692.2-201ENST00000608391 879 ntBASIC16.45■□□□□ 0.22
CLPTM1O96005 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.45■□□□□ 0.22
CLPTM1O96005 KRT8P9-201ENST00000558927 1449 ntBASIC16.45■□□□□ 0.22
CLPTM1O96005 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.45■□□□□ 0.22
CLPTM1O96005 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLPTM1O96005 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CLPTM1O96005 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.44■□□□□ 0.22
CLPTM1O96005 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.44■□□□□ 0.22
CLPTM1O96005 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CLPTM1O96005 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.44■□□□□ 0.22
CLPTM1O96005 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CLPTM1O96005 DBET-201ENST00000630918 3363 ntBASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms