Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AP000867.4-201ENST00000641616 219 ntBASIC18.62■□□□□ 0.57
FOXN3O00409 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXN3O00409 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXN3O00409 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXN3O00409 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 AC011676.5-201ENST00000624864 2660 ntBASIC18.62■□□□□ 0.57
FOXN3O00409 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
FOXN3O00409 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 AC099398.1-201ENST00000567919 2776 ntBASIC18.61■□□□□ 0.57
FOXN3O00409 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXN3O00409 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.61■□□□□ 0.57
FOXN3O00409 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
FOXN3O00409 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
FOXN3O00409 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXN3O00409 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
FOXN3O00409 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.61■□□□□ 0.57
FOXN3O00409 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.61■□□□□ 0.57
FOXN3O00409 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.61■□□□□ 0.57
FOXN3O00409 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
FOXN3O00409 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXN3O00409 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXN3O00409 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXN3O00409 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXN3O00409 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
FOXN3O00409 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
FOXN3O00409 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
FOXN3O00409 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
FOXN3O00409 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.6■□□□□ 0.57
FOXN3O00409 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.6■□□□□ 0.57
FOXN3O00409 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 KLF4P1-201ENST00000412782 1185 ntBASIC18.6■□□□□ 0.57
FOXN3O00409 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.6■□□□□ 0.57
FOXN3O00409 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.6■□□□□ 0.57
FOXN3O00409 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
FOXN3O00409 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.6■□□□□ 0.57
FOXN3O00409 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.6■□□□□ 0.57
FOXN3O00409 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.6■□□□□ 0.57
FOXN3O00409 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.6■□□□□ 0.57
FOXN3O00409 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
FOXN3O00409 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
FOXN3O00409 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXN3O00409 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.6■□□□□ 0.57
FOXN3O00409 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXN3O00409 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXN3O00409 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXN3O00409 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXN3O00409 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXN3O00409 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
FOXN3O00409 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.59■□□□□ 0.57
FOXN3O00409 AC106886.4-201ENST00000623557 2502 ntBASIC18.59■□□□□ 0.57
FOXN3O00409 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
FOXN3O00409 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.59■□□□□ 0.57
FOXN3O00409 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.59■□□□□ 0.57
FOXN3O00409 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXN3O00409 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
FOXN3O00409 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
FOXN3O00409 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXN3O00409 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXN3O00409 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms