Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 AC010203.1-204ENST00000548782 407 ntBASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 GPR32P1-201ENST00000601788 811 ntBASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 AC145285.6-201ENST00000604632 637 ntBASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM49D1C9J1S8 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 COX5BP2-201ENST00000392354 334 ntBASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM49D1C9J1S8 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 AL603756.1-201ENST00000606511 2163 ntBASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 MIR662-201ENST00000384847 95 ntBASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 LIN28AP1-201ENST00000429574 405 ntBASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 AC011558.1-201ENST00000623459 338 ntBASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 AC079328.2-201ENST00000561241 3354 ntBASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 AC097374.2-201ENST00000618617 1306 ntBASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM49D1C9J1S8 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms