Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NDE1Q9NXR1 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 LINC02012-201ENST00000608206 1725 ntBASIC16.9■□□□□ 0.3
NDE1Q9NXR1 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 AC097488.1-201ENST00000507834 756 ntBASIC16.9■□□□□ 0.3
NDE1Q9NXR1 RNA5SP413-201ENST00000516373 109 ntBASIC16.9■□□□□ 0.3
NDE1Q9NXR1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 BX276092.7-203ENST00000637198 1536 ntBASIC16.9■□□□□ 0.3
NDE1Q9NXR1 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
NDE1Q9NXR1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
NDE1Q9NXR1 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
NDE1Q9NXR1 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
NDE1Q9NXR1 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
NDE1Q9NXR1 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 AC092068.3-201ENST00000587894 2016 ntBASIC16.89■□□□□ 0.29
NDE1Q9NXR1 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 AC005104.2-201ENST00000427818 678 ntBASIC16.89■□□□□ 0.29
NDE1Q9NXR1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.89■□□□□ 0.29
NDE1Q9NXR1 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 AC063926.3-201ENST00000624734 5658 ntBASIC16.89■□□□□ 0.29
NDE1Q9NXR1 AC105917.1-201ENST00000506637 2539 ntBASIC16.89■□□□□ 0.29
NDE1Q9NXR1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
NDE1Q9NXR1 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NDE1Q9NXR1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms