Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 AC133963.1-201ENST00000504166 1679 ntBASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 GNAS-203ENST00000306120 1878 ntBASIC17.29■□□□□ 0.36
TRIM39Q9HCM9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 AC009336.1-201ENST00000608941 1553 ntBASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 KRT18P67-201ENST00000432816 1264 ntBASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM39Q9HCM9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 MRPL3P1-201ENST00000400109 1033 ntBASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 BX005266.1-201ENST00000473402 457 ntBASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 SLC25A6P4-201ENST00000586535 553 ntBASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 MTDHP4-201ENST00000600287 670 ntBASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 AL139327.4-201ENST00000612362 153 ntBASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM39Q9HCM9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM39Q9HCM9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 AC004817.3-201ENST00000602957 2129 ntBASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms