Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FOXO1B-201ENST00000504678 1527 ntBASIC22.27■■□□□ 1.15
SHANK3Q9BYB0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 AC004890.2-204ENST00000481968 304 ntBASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 AC109635.5-201ENST00000533593 962 ntBASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 TSSK5P-201ENST00000423978 907 ntBASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 LINC02560-201ENST00000596379 459 ntBASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC22.26■■□□□ 1.15
SHANK3Q9BYB0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 AC090164.3-201ENST00000610780 2143 ntBASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 OR8S1-201ENST00000310194 1080 ntBASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 ALG1L8P-201ENST00000533887 760 ntBASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 AP000842.3-202ENST00000569238 1080 ntBASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
SHANK3Q9BYB0 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 RNA5SP421-201ENST00000516864 134 ntBASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 BX323043.1-201ENST00000641006 1765 ntBASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC22.24■■□□□ 1.15
SHANK3Q9BYB0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 RAC2-204ENST00000406508 893 ntTSL 5 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 UXT-AS1-201ENST00000590504 1525 ntBASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC22.23■■□□□ 1.15
SHANK3Q9BYB0 MTRF1LP2-201ENST00000506027 1122 ntBASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms