Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 GPX4-207ENST00000589115 812 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 AC024563.2-201ENST00000603282 481 ntBASIC15.23■□□□□ 0.03
NKX3-1Q99801 AC116407.2-201ENST00000613639 860 ntBASIC15.23■□□□□ 0.03
NKX3-1Q99801 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 LINC01451-201ENST00000623792 534 ntBASIC15.22■□□□□ 0.03
NKX3-1Q99801 AC141257.4-201ENST00000634557 245 ntBASIC15.22■□□□□ 0.03
NKX3-1Q99801 AC136944.6-201ENST00000634818 245 ntBASIC15.22■□□□□ 0.03
NKX3-1Q99801 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.22■□□□□ 0.03
NKX3-1Q99801 LINC02199-201ENST00000506655 2702 ntBASIC15.22■□□□□ 0.03
NKX3-1Q99801 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NKX3-1Q99801 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 FER1L4-210ENST00000615531 5998 ntBASIC15.21■□□□□ 0.03
NKX3-1Q99801 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 KRT18P65-201ENST00000439811 1286 ntBASIC15.21■□□□□ 0.03
NKX3-1Q99801 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms