Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMC1BQ8NDV3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 HAUS4P1-201ENST00000406739 1145 ntBASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMC1BQ8NDV3 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 AC093677.2-201ENST00000600169 1863 ntBASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 FAM86MP-201ENST00000340703 885 ntBASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 ACTG1P4-201ENST00000425123 1122 ntBASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 AC011495.1-201ENST00000498085 584 ntBASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 AC104794.3-201ENST00000566840 1248 ntBASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 AC132938.2-201ENST00000579188 680 ntBASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 AL591163.1-201ENST00000641757 987 ntBASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMC1BQ8NDV3 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 SLC25A6P2-201ENST00000497974 877 ntBASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 RETN-203ENST00000629642 400 ntTSL 5 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC1BQ8NDV3 GMCL1P1-201ENST00000463439 1581 ntBASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms