Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SH3RF1Q7Z6J0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 CYMP-203ENST00000474680 1263 ntBASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 AP001094.4-201ENST00000579008 2176 ntBASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.9■□□□□ 0.78
SH3RF1Q7Z6J0 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
SH3RF1Q7Z6J0 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SH3RF1Q7Z6J0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 RFPL4AP1-201ENST00000530883 850 ntBASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SH3RF1Q7Z6J0 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SH3RF1Q7Z6J0 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AC096633.1-201ENST00000422446 749 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms