Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 KRT18P31-201ENST00000506277 1292 ntBASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 AC073592.5-201ENST00000624854 528 ntBASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 PP12613-201ENST00000424958 2230 ntBASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.51■□□□□ 0.87
SYNE3Q6ZMZ3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 TSPY19P-201ENST00000418461 509 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 TSPY18P-201ENST00000441642 509 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 ABCD1P5-201ENST00000445663 754 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 AC132008.2-207ENST00000454517 770 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 STK19B-204ENST00000512515 211 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 STK25P1-201ENST00000585406 838 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 AC141586.5-201ENST00000624546 2050 ntBASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.5■□□□□ 0.87
SYNE3Q6ZMZ3 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 AL645608.8-201ENST00000606034 2086 ntBASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 AC003669.1-201ENST00000334569 611 ntBASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SYNE3Q6ZMZ3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SYNE3Q6ZMZ3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SYNE3Q6ZMZ3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.48■□□□□ 0.87
SYNE3Q6ZMZ3 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SYNE3Q6ZMZ3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SYNE3Q6ZMZ3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.48■□□□□ 0.87
SYNE3Q6ZMZ3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SYNE3Q6ZMZ3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms