Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.65■□□□□ 0.58
VCPP55072 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.65■□□□□ 0.58
VCPP55072 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VCPP55072 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.65■□□□□ 0.58
VCPP55072 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VCPP55072 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.65■□□□□ 0.58
VCPP55072 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.65■□□□□ 0.58
VCPP55072 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VCPP55072 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCPP55072 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VCPP55072 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
VCPP55072 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
VCPP55072 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VCPP55072 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.64■□□□□ 0.58
VCPP55072 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VCPP55072 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.64■□□□□ 0.57
VCPP55072 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.64■□□□□ 0.57
VCPP55072 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.64■□□□□ 0.57
VCPP55072 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.64■□□□□ 0.57
VCPP55072 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.64■□□□□ 0.57
VCPP55072 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
VCPP55072 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.64■□□□□ 0.57
VCPP55072 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.64■□□□□ 0.57
VCPP55072 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.64■□□□□ 0.57
VCPP55072 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.64■□□□□ 0.57
VCPP55072 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
VCPP55072 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
VCPP55072 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
VCPP55072 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
VCPP55072 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
VCPP55072 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VCPP55072 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
VCPP55072 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.63■□□□□ 0.57
VCPP55072 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.63■□□□□ 0.57
VCPP55072 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.63■□□□□ 0.57
VCPP55072 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VCPP55072 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.63■□□□□ 0.57
VCPP55072 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
VCPP55072 AL645608.8-201ENST00000606034 2086 ntBASIC18.63■□□□□ 0.57
VCPP55072 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.63■□□□□ 0.57
VCPP55072 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.63■□□□□ 0.57
VCPP55072 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.63■□□□□ 0.57
VCPP55072 AC068472.1-201ENST00000474589 881 ntBASIC18.63■□□□□ 0.57
VCPP55072 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.63■□□□□ 0.57
VCPP55072 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.63■□□□□ 0.57
VCPP55072 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
VCPP55072 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 AC005336.2-201ENST00000593183 939 ntBASIC18.63■□□□□ 0.57
VCPP55072 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.63■□□□□ 0.57
VCPP55072 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VCPP55072 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCPP55072 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.62■□□□□ 0.57
VCPP55072 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VCPP55072 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
VCPP55072 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.62■□□□□ 0.57
VCPP55072 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.62■□□□□ 0.57
VCPP55072 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.62■□□□□ 0.57
VCPP55072 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.62■□□□□ 0.57
VCPP55072 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms