Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
RFX3P48380 DDX43P3-201ENST00000441064 443 ntBASIC16.4■□□□□ 0.22
RFX3P48380 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.4■□□□□ 0.22
RFX3P48380 AC091607.1-201ENST00000490318 1060 ntBASIC16.4■□□□□ 0.22
RFX3P48380 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 AP000867.3-201ENST00000524675 377 ntBASIC16.4■□□□□ 0.22
RFX3P48380 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.4■□□□□ 0.22
RFX3P48380 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX3P48380 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
RFX3P48380 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX3P48380 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
RFX3P48380 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.39■□□□□ 0.21
RFX3P48380 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.39■□□□□ 0.21
RFX3P48380 AL845331.1-201ENST00000424978 1190 ntBASIC16.39■□□□□ 0.21
RFX3P48380 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 AP002383.4-201ENST00000442518 975 ntBASIC16.39■□□□□ 0.21
RFX3P48380 MINOS1P3-201ENST00000457048 203 ntBASIC16.39■□□□□ 0.21
RFX3P48380 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
RFX3P48380 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.39■□□□□ 0.21
RFX3P48380 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
RFX3P48380 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX3P48380 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 REXO1L11P-201ENST00000620964 1927 ntBASIC16.39■□□□□ 0.21
RFX3P48380 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX3P48380 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
RFX3P48380 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.38■□□□□ 0.21
RFX3P48380 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.38■□□□□ 0.21
RFX3P48380 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.38■□□□□ 0.21
RFX3P48380 TPSP2-201ENST00000561760 610 ntBASIC16.38■□□□□ 0.21
RFX3P48380 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.38■□□□□ 0.21
RFX3P48380 AC005336.2-201ENST00000593183 939 ntBASIC16.38■□□□□ 0.21
RFX3P48380 Z69720.1-201ENST00000601483 472 ntBASIC16.38■□□□□ 0.21
RFX3P48380 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.38■□□□□ 0.21
RFX3P48380 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.38■□□□□ 0.21
RFX3P48380 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX3P48380 AC010460.3-201ENST00000511359 1579 ntBASIC16.38■□□□□ 0.21
RFX3P48380 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms