Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CDX1P47902 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CDX1P47902 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.29□□□□□ -0.12
CDX1P47902 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.28□□□□□ -0.12
CDX1P47902 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.28□□□□□ -0.12
CDX1P47902 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.28□□□□□ -0.12
CDX1P47902 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.28□□□□□ -0.12
CDX1P47902 AL163051.1-201ENST00000569214 1512 ntBASIC14.28□□□□□ -0.12
CDX1P47902 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.28□□□□□ -0.12
CDX1P47902 AC011498.5-201ENST00000592027 486 ntBASIC14.28□□□□□ -0.12
CDX1P47902 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.28□□□□□ -0.12
CDX1P47902 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.28□□□□□ -0.12
CDX1P47902 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDX1P47902 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDX1P47902 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CDX1P47902 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.27□□□□□ -0.12
CDX1P47902 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC14.27□□□□□ -0.12
CDX1P47902 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CDX1P47902 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDX1P47902 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CDX1P47902 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDX1P47902 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CDX1P47902 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC14.27□□□□□ -0.12
CDX1P47902 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
CDX1P47902 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CDX1P47902 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.27□□□□□ -0.13
CDX1P47902 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.27□□□□□ -0.13
CDX1P47902 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CDX1P47902 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.27□□□□□ -0.13
CDX1P47902 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.27□□□□□ -0.13
CDX1P47902 CBFB-203ENST00000561924 584 ntTSL 5 BASIC14.27□□□□□ -0.13
CDX1P47902 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.27□□□□□ -0.13
CDX1P47902 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.27□□□□□ -0.13
CDX1P47902 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.27□□□□□ -0.13
CDX1P47902 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 LINC00602-201ENST00000629776 2065 ntBASIC14.27□□□□□ -0.13
CDX1P47902 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.27□□□□□ -0.13
CDX1P47902 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.27□□□□□ -0.13
CDX1P47902 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.27□□□□□ -0.13
CDX1P47902 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.27□□□□□ -0.13
CDX1P47902 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDX1P47902 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.26□□□□□ -0.13
CDX1P47902 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.26□□□□□ -0.13
CDX1P47902 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.26□□□□□ -0.13
CDX1P47902 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDX1P47902 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
CDX1P47902 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms