Protein–RNA interactions for Protein: P31276

HOXC13, Homeobox protein Hox-C13, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC13P31276 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.97■□□□□ 0.47
HOXC13P31276 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC13P31276 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC13P31276 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.97■□□□□ 0.47
HOXC13P31276 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
HOXC13P31276 AL020989.1-201ENST00000422979 469 ntBASIC17.97■□□□□ 0.47
HOXC13P31276 KRT18P27-201ENST00000427733 1299 ntBASIC17.97■□□□□ 0.47
HOXC13P31276 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC13P31276 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC13P31276 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.97■□□□□ 0.47
HOXC13P31276 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.97■□□□□ 0.47
HOXC13P31276 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.97■□□□□ 0.47
HOXC13P31276 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.97■□□□□ 0.47
HOXC13P31276 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.97■□□□□ 0.47
HOXC13P31276 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.97■□□□□ 0.47
HOXC13P31276 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.97■□□□□ 0.47
HOXC13P31276 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC13P31276 AC016396.2-201ENST00000562575 1417 ntBASIC17.97■□□□□ 0.47
HOXC13P31276 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 KRT18P28-201ENST00000453838 1332 ntBASIC17.97■□□□□ 0.47
HOXC13P31276 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC13P31276 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC13P31276 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC13P31276 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC13P31276 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC13P31276 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC13P31276 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC13P31276 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC13P31276 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.96■□□□□ 0.47
HOXC13P31276 METTL21AP1-201ENST00000438852 635 ntBASIC17.96■□□□□ 0.47
HOXC13P31276 DNAJB3-201ENST00000446806 729 ntBASIC17.96■□□□□ 0.47
HOXC13P31276 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC13P31276 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC13P31276 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.96■□□□□ 0.47
HOXC13P31276 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.96■□□□□ 0.47
HOXC13P31276 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC13P31276 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC13P31276 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC13P31276 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC13P31276 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HOXC13P31276 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HOXC13P31276 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC13P31276 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC13P31276 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.96■□□□□ 0.46
HOXC13P31276 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HOXC13P31276 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC13P31276 AC020763.4-201ENST00000623414 4170 ntBASIC17.95■□□□□ 0.46
HOXC13P31276 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 AC211486.1-202ENST00000416371 468 ntBASIC17.95■□□□□ 0.46
HOXC13P31276 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.95■□□□□ 0.46
HOXC13P31276 LAGE3P1-201ENST00000425356 484 ntBASIC17.95■□□□□ 0.46
HOXC13P31276 PRYP5-201ENST00000451909 266 ntBASIC17.95■□□□□ 0.46
HOXC13P31276 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC13P31276 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 AC211476.1-201ENST00000503899 468 ntBASIC17.95■□□□□ 0.46
HOXC13P31276 AC002347.1-201ENST00000569543 541 ntBASIC17.95■□□□□ 0.46
HOXC13P31276 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC13P31276 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC13P31276 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
HOXC13P31276 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC13P31276 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.95■□□□□ 0.46
HOXC13P31276 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.95■□□□□ 0.46
HOXC13P31276 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC13P31276 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HOXC13P31276 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HOXC13P31276 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC13P31276 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC13P31276 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC13P31276 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC13P31276 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC13P31276 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HOXC13P31276 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC13P31276 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HOXC13P31276 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HOXC13P31276 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.94■□□□□ 0.46
HOXC13P31276 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.94■□□□□ 0.46
HOXC13P31276 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.94■□□□□ 0.46
HOXC13P31276 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC13P31276 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC13P31276 AC018845.2-201ENST00000568326 409 ntBASIC17.94■□□□□ 0.46
HOXC13P31276 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms