Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL6A2P12110 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 RN7SL606P-201ENST00000472779 293 ntBASIC17.22■□□□□ 0.35
COL6A2P12110 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A2P12110 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.22■□□□□ 0.35
COL6A2P12110 AC111152.3-201ENST00000569699 673 ntBASIC17.22■□□□□ 0.35
COL6A2P12110 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A2P12110 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A2P12110 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A2P12110 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
COL6A2P12110 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL6A2P12110 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A2P12110 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL6A2P12110 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A2P12110 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COL6A2P12110 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A2P12110 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A2P12110 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A2P12110 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
COL6A2P12110 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.21■□□□□ 0.35
COL6A2P12110 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 AC092647.4-201ENST00000457211 535 ntBASIC17.21■□□□□ 0.35
COL6A2P12110 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.21■□□□□ 0.35
COL6A2P12110 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A2P12110 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A2P12110 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 AC005915.1-201ENST00000624912 2018 ntBASIC17.21■□□□□ 0.35
COL6A2P12110 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A2P12110 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A2P12110 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A2P12110 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A2P12110 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.21■□□□□ 0.34
COL6A2P12110 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A2P12110 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
COL6A2P12110 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 AL049757.1-201ENST00000616842 1596 ntBASIC17.2■□□□□ 0.34
COL6A2P12110 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A2P12110 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
COL6A2P12110 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
COL6A2P12110 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A2P12110 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A2P12110 AC092053.1-201ENST00000605787 1936 ntBASIC17.2■□□□□ 0.34
COL6A2P12110 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
COL6A2P12110 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
COL6A2P12110 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A2P12110 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
COL6A2P12110 SPDYE13P-201ENST00000445314 798 ntBASIC17.2■□□□□ 0.34
COL6A2P12110 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.2■□□□□ 0.34
COL6A2P12110 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A2P12110 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A2P12110 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.2■□□□□ 0.34
COL6A2P12110 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.2■□□□□ 0.34
COL6A2P12110 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms