Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
RNF40O75150 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF40O75150 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF40O75150 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF40O75150 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.84■□□□□ 0.61
RNF40O75150 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RNF40O75150 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
RNF40O75150 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
RNF40O75150 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF40O75150 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.84■□□□□ 0.61
RNF40O75150 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF40O75150 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.84■□□□□ 0.61
RNF40O75150 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 AC034236.2-201ENST00000606662 1610 ntBASIC18.84■□□□□ 0.61
RNF40O75150 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF40O75150 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
RNF40O75150 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
RNF40O75150 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF40O75150 KRT8P32-201ENST00000512863 1461 ntBASIC18.84■□□□□ 0.61
RNF40O75150 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF40O75150 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 AC233702.3-201ENST00000578656 1387 ntBASIC18.83■□□□□ 0.61
RNF40O75150 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.61
RNF40O75150 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF40O75150 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
RNF40O75150 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF40O75150 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF40O75150 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF40O75150 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.83■□□□□ 0.6
RNF40O75150 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.83■□□□□ 0.6
RNF40O75150 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
RNF40O75150 GPR32P1-201ENST00000601788 811 ntBASIC18.83■□□□□ 0.6
RNF40O75150 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
RNF40O75150 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
RNF40O75150 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
RNF40O75150 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
RNF40O75150 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF40O75150 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
RNF40O75150 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF40O75150 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
RNF40O75150 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.82■□□□□ 0.6
RNF40O75150 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF40O75150 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF40O75150 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF40O75150 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.82■□□□□ 0.6
RNF40O75150 Z69720.1-201ENST00000601483 472 ntBASIC18.82■□□□□ 0.6
RNF40O75150 AC099336.1-202ENST00000602961 463 ntBASIC18.82■□□□□ 0.6
RNF40O75150 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF40O75150 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
RNF40O75150 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF40O75150 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.82■□□□□ 0.6
RNF40O75150 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RNF40O75150 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms