Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1BO60663 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
LMX1BO60663 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.34■□□□□ 0.05
LMX1BO60663 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1BO60663 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1BO60663 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1BO60663 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
LMX1BO60663 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 OR6D1P-202ENST00000641007 5290 ntBASIC15.33■□□□□ 0.04
LMX1BO60663 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LMX1BO60663 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.33■□□□□ 0.04
LMX1BO60663 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.33■□□□□ 0.04
LMX1BO60663 KRT18P31-201ENST00000506277 1292 ntBASIC15.33■□□□□ 0.04
LMX1BO60663 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.33■□□□□ 0.04
LMX1BO60663 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 RNF126P1-202ENST00000569893 925 ntBASIC15.33■□□□□ 0.04
LMX1BO60663 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LMX1BO60663 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.33■□□□□ 0.04
LMX1BO60663 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.33■□□□□ 0.04
LMX1BO60663 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.33■□□□□ 0.04
LMX1BO60663 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LMX1BO60663 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1BO60663 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
LMX1BO60663 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LMX1BO60663 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
LMX1BO60663 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1BO60663 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1BO60663 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.32■□□□□ 0.04
LMX1BO60663 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
LMX1BO60663 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
LMX1BO60663 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LMX1BO60663 AC079781.3-201ENST00000449110 356 ntBASIC15.32■□□□□ 0.04
LMX1BO60663 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.32■□□□□ 0.04
LMX1BO60663 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.32■□□□□ 0.04
LMX1BO60663 AC090616.6-201ENST00000582640 721 ntBASIC15.32■□□□□ 0.04
LMX1BO60663 AC104692.2-201ENST00000603054 253 ntBASIC15.32■□□□□ 0.04
LMX1BO60663 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 IGHV3-41-201ENST00000613121 348 ntBASIC15.32■□□□□ 0.04
LMX1BO60663 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LMX1BO60663 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LMX1BO60663 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 AC060834.1-201ENST00000443027 2032 ntBASIC15.32■□□□□ 0.04
LMX1BO60663 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LMX1BO60663 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LMX1BO60663 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.32■□□□□ 0.04
LMX1BO60663 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.32■□□□□ 0.04
LMX1BO60663 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1BO60663 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
LMX1BO60663 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LMX1BO60663 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LMX1BO60663 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1BO60663 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LMX1BO60663 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 AC106886.4-201ENST00000623557 2502 ntBASIC15.31■□□□□ 0.04
LMX1BO60663 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LMX1BO60663 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.31■□□□□ 0.04
LMX1BO60663 AC079776.4-201ENST00000511039 504 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms