Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXC11O43248 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 AL133373.2-201ENST00000623187 2828 ntBASIC17.67■□□□□ 0.42
HOXC11O43248 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HOXC11O43248 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HOXC11O43248 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
HOXC11O43248 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXC11O43248 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXC11O43248 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXC11O43248 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HOXC11O43248 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXC11O43248 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXC11O43248 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXC11O43248 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXC11O43248 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 CXCL1P1-201ENST00000502804 216 ntBASIC17.66■□□□□ 0.42
HOXC11O43248 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
HOXC11O43248 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXC11O43248 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.66■□□□□ 0.42
HOXC11O43248 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXC11O43248 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
HOXC11O43248 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HOXC11O43248 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXC11O43248 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC11O43248 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
HOXC11O43248 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.65■□□□□ 0.42
HOXC11O43248 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.65■□□□□ 0.42
HOXC11O43248 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXC11O43248 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 AC023141.13-201ENST00000604991 943 ntBASIC17.65■□□□□ 0.42
HOXC11O43248 AL078644.1-201ENST00000609881 752 ntBASIC17.65■□□□□ 0.42
HOXC11O43248 AC007064.4-201ENST00000637740 555 ntBASIC17.65■□□□□ 0.42
HOXC11O43248 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 AC135050.7-201ENST00000624508 2218 ntBASIC17.65■□□□□ 0.42
HOXC11O43248 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXC11O43248 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXC11O43248 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC11O43248 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC11O43248 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HOXC11O43248 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HOXC11O43248 PCDHB18P-201ENST00000524813 2368 ntBASIC17.65■□□□□ 0.42
HOXC11O43248 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.64■□□□□ 0.42
HOXC11O43248 AC025580.3-201ENST00000617932 1424 ntBASIC17.64■□□□□ 0.42
HOXC11O43248 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HOXC11O43248 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC11O43248 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
HOXC11O43248 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC11O43248 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
HOXC11O43248 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.64■□□□□ 0.41
HOXC11O43248 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.64■□□□□ 0.41
HOXC11O43248 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
HOXC11O43248 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC11O43248 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC11O43248 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
HOXC11O43248 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms