Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC007950.2-201ENST00000615045 2347 ntBASIC12.78□□□□□ -0.36
SMKR1H3BMG3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 AC133681.1-201ENST00000465482 601 ntBASIC12.78□□□□□ -0.36
SMKR1H3BMG3 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 KRT8P7-201ENST00000533003 1432 ntBASIC12.78□□□□□ -0.36
SMKR1H3BMG3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 AC078925.2-201ENST00000624013 1973 ntBASIC12.78□□□□□ -0.36
SMKR1H3BMG3 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC12.77□□□□□ -0.36
SMKR1H3BMG3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 RNA5SP413-201ENST00000516373 109 ntBASIC12.77□□□□□ -0.37
SMKR1H3BMG3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 AC092053.1-201ENST00000605787 1936 ntBASIC12.77□□□□□ -0.37
SMKR1H3BMG3 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 AC092068.3-201ENST00000587894 2016 ntBASIC12.77□□□□□ -0.37
SMKR1H3BMG3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 AC096733.2-201ENST00000609937 1394 ntBASIC12.77□□□□□ -0.37
SMKR1H3BMG3 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 LINC00167-201ENST00000530583 1419 ntBASIC12.77□□□□□ -0.37
SMKR1H3BMG3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 FSCN1P1-201ENST00000568912 1481 ntBASIC12.77□□□□□ -0.37
SMKR1H3BMG3 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.77□□□□□ -0.37
SMKR1H3BMG3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 NORAD-201ENST00000565493 5339 ntBASIC12.76□□□□□ -0.37
SMKR1H3BMG3 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms