Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KRT18P31-201ENST00000506277 1292 ntBASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 AP001269.4-201ENST00000609611 512 ntBASIC13.49□□□□□ -0.25
CCDC140Q96MF4 AC012313.10-201ENST00000623509 926 ntBASIC13.49□□□□□ -0.25
CCDC140Q96MF4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 AC148477.5-201ENST00000625164 1645 ntBASIC13.49□□□□□ -0.25
CCDC140Q96MF4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC140Q96MF4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 AL135999.2-201ENST00000622438 1686 ntBASIC13.48□□□□□ -0.25
CCDC140Q96MF4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 TSPY19P-201ENST00000418461 509 ntBASIC13.48□□□□□ -0.25
CCDC140Q96MF4 TSPY18P-201ENST00000441642 509 ntBASIC13.48□□□□□ -0.25
CCDC140Q96MF4 AC132008.2-207ENST00000454517 770 ntBASIC13.48□□□□□ -0.25
CCDC140Q96MF4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 CLEC4GP1-201ENST00000596555 870 ntBASIC13.48□□□□□ -0.25
CCDC140Q96MF4 AL121772.3-201ENST00000610840 674 ntBASIC13.48□□□□□ -0.25
CCDC140Q96MF4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC140Q96MF4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 AL020989.1-201ENST00000422979 469 ntBASIC13.47□□□□□ -0.25
CCDC140Q96MF4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 KRT18P56-201ENST00000507275 550 ntBASIC13.47□□□□□ -0.25
CCDC140Q96MF4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC13.47□□□□□ -0.25
CCDC140Q96MF4 RN7SL371P-201ENST00000578099 267 ntBASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms