Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 MTDHP4-201ENST00000600287 670 ntBASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.58■□□□□ 0.89
NKX2-3Q8TAU0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 AC106820.2-201ENST00000563775 3264 ntBASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 AL135999.2-201ENST00000622438 1686 ntBASIC20.58■□□□□ 0.88
NKX2-3Q8TAU0 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 AC108860.2-201ENST00000562760 2183 ntBASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX2-3Q8TAU0 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 STK19B-204ENST00000512515 211 ntBASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX2-3Q8TAU0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 AC046185.3-201ENST00000623228 1824 ntBASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 AL020989.1-201ENST00000422979 469 ntBASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 FAM8A3P-201ENST00000427218 844 ntBASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 AC008735.5-201ENST00000623544 497 ntBASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX2-3Q8TAU0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX2-3Q8TAU0 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms