Protein–RNA interactions for Protein: Q8N609

TRAM1L1, Translocating chain-associated membrane protein 1-like 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1L1Q8N609 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAM1L1Q8N609 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TRAM1L1Q8N609 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAM1L1Q8N609 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAM1L1Q8N609 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 AP001005.1-201ENST00000571755 1248 ntBASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 AC006557.2-201ENST00000592985 1240 ntBASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 AC004706.3-202ENST00000621574 984 ntBASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.21■□□□□ 0.35
TRAM1L1Q8N609 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.21■□□□□ 0.34
TRAM1L1Q8N609 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAM1L1Q8N609 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 RNA5SP419-201ENST00000515908 135 ntBASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 AL353135.1-201ENST00000606729 504 ntBASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 AL139424.1-201ENST00000607572 797 ntBASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 AC008735.5-201ENST00000623544 497 ntBASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAM1L1Q8N609 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 AC093909.1-201ENST00000504731 1122 ntBASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAM1L1Q8N609 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms