Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.48■□□□□ 0.39
HDDC3Q8N4P3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 CRYGEP-201ENST00000412192 528 ntBASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 LINC00982-205ENST00000420957 435 ntBASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AC108073.2-201ENST00000464002 357 ntBASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 MIR4751-201ENST00000578027 74 ntBASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AC008667.4-201ENST00000607370 168 ntBASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDDC3Q8N4P3 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 AC002310.6-201ENST00000624451 1377 ntBASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 AC254562.1-201ENST00000417586 456 ntBASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 IGHV3-65-201ENST00000523210 341 ntBASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 RFPL4AP1-201ENST00000530883 850 ntBASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 AC092364.2-202ENST00000597012 1073 ntBASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDDC3Q8N4P3 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
HDDC3Q8N4P3 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 REXO1L11P-201ENST00000620964 1927 ntBASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.45■□□□□ 0.38
HDDC3Q8N4P3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms