Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
BEST3Q8N1M1 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
BEST3Q8N1M1 AL049757.1-201ENST00000616842 1596 ntBASIC16.21■□□□□ 0.18
BEST3Q8N1M1 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
BEST3Q8N1M1 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
BEST3Q8N1M1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
BEST3Q8N1M1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.21■□□□□ 0.18
BEST3Q8N1M1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 IGHV3-22-201ENST00000520721 359 ntBASIC16.2■□□□□ 0.18
BEST3Q8N1M1 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 AC105339.3-201ENST00000560043 636 ntBASIC16.2■□□□□ 0.18
BEST3Q8N1M1 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.2■□□□□ 0.18
BEST3Q8N1M1 AC012313.1-201ENST00000593393 3059 ntBASIC16.2■□□□□ 0.18
BEST3Q8N1M1 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BEST3Q8N1M1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 SIGLEC16-201ENST00000599858 1437 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AC104109.2-201ENST00000602919 1418 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 BX276092.7-203ENST00000637198 1536 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AP002414.3-201ENST00000589352 1468 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 MIR940-201ENST00000401276 94 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AL020989.1-201ENST00000422979 469 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 DDX43P3-201ENST00000441064 443 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 POLD2P1-201ENST00000511220 997 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 AC132938.5-201ENST00000624980 1813 ntBASIC16.19■□□□□ 0.18
BEST3Q8N1M1 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
BEST3Q8N1M1 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms