Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SRP54P61011 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.21■□□□□ 0.35
SRP54P61011 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.21■□□□□ 0.35
SRP54P61011 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.21■□□□□ 0.35
SRP54P61011 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 MYCLP1-201ENST00000372451 1075 ntBASIC17.21■□□□□ 0.35
SRP54P61011 AC073621.1-201ENST00000392730 636 ntBASIC17.21■□□□□ 0.35
SRP54P61011 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.21■□□□□ 0.35
SRP54P61011 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.21■□□□□ 0.35
SRP54P61011 AC136632.2-201ENST00000512891 861 ntBASIC17.21■□□□□ 0.35
SRP54P61011 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.21■□□□□ 0.35
SRP54P61011 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.21■□□□□ 0.35
SRP54P61011 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 AC004706.3-202ENST00000621574 984 ntBASIC17.21■□□□□ 0.35
SRP54P61011 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.21■□□□□ 0.35
SRP54P61011 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
SRP54P61011 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SRP54P61011 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.21■□□□□ 0.35
SRP54P61011 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.21■□□□□ 0.35
SRP54P61011 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SRP54P61011 NCF1C-201ENST00000438382 1427 ntBASIC17.21■□□□□ 0.34
SRP54P61011 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
SRP54P61011 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.2■□□□□ 0.34
SRP54P61011 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.2■□□□□ 0.34
SRP54P61011 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.2■□□□□ 0.34
SRP54P61011 AC140113.2-201ENST00000604370 208 ntBASIC17.2■□□□□ 0.34
SRP54P61011 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SRP54P61011 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.2■□□□□ 0.34
SRP54P61011 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.2■□□□□ 0.34
SRP54P61011 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SRP54P61011 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SRP54P61011 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.2■□□□□ 0.34
SRP54P61011 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SRP54P61011 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
SRP54P61011 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 AC009336.1-201ENST00000608941 1553 ntBASIC17.19■□□□□ 0.34
SRP54P61011 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 AC018470.1-201ENST00000624790 3129 ntBASIC17.19■□□□□ 0.34
SRP54P61011 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SRP54P61011 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.19■□□□□ 0.34
SRP54P61011 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
SRP54P61011 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP54P61011 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 MED15P5-201ENST00000423150 992 ntBASIC17.19■□□□□ 0.34
SRP54P61011 AL591424.1-201ENST00000442569 1213 ntBASIC17.19■□□□□ 0.34
SRP54P61011 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.19■□□□□ 0.34
SRP54P61011 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.19■□□□□ 0.34
SRP54P61011 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
SRP54P61011 FAM197Y3-203ENST00000618346 717 ntBASIC17.19■□□□□ 0.34
SRP54P61011 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP54P61011 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SRP54P61011 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SRP54P61011 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.19■□□□□ 0.34
SRP54P61011 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.19■□□□□ 0.34
SRP54P61011 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP54P61011 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
SRP54P61011 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SRP54P61011 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP54P61011 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP54P61011 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP54P61011 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.18■□□□□ 0.34
SRP54P61011 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms