Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH13P55290 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CDH13P55290 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH13P55290 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.08■□□□□ 0.32
CDH13P55290 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH13P55290 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CDH13P55290 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH13P55290 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.07■□□□□ 0.32
CDH13P55290 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH13P55290 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CDH13P55290 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH13P55290 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.07■□□□□ 0.32
CDH13P55290 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH13P55290 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH13P55290 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CDH13P55290 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH13P55290 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH13P55290 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH13P55290 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH13P55290 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH13P55290 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH13P55290 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH13P55290 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CDH13P55290 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH13P55290 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH13P55290 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH13P55290 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDH13P55290 AC046185.3-201ENST00000623228 1824 ntBASIC17.07■□□□□ 0.32
CDH13P55290 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH13P55290 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDH13P55290 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 AGGF1P2-201ENST00000426656 2106 ntBASIC17.06■□□□□ 0.32
CDH13P55290 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH13P55290 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CDH13P55290 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.06■□□□□ 0.32
CDH13P55290 AL671277.2-201ENST00000458060 996 ntBASIC17.06■□□□□ 0.32
CDH13P55290 AC002558.1-201ENST00000488906 803 ntBASIC17.06■□□□□ 0.32
CDH13P55290 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.06■□□□□ 0.32
CDH13P55290 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.06■□□□□ 0.32
CDH13P55290 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH13P55290 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH13P55290 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH13P55290 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH13P55290 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH13P55290 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CDH13P55290 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH13P55290 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH13P55290 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CDH13P55290 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDH13P55290 AL645929.1-201ENST00000420084 975 ntBASIC17.05■□□□□ 0.32
CDH13P55290 AC007967.3-201ENST00000434308 558 ntBASIC17.05■□□□□ 0.32
CDH13P55290 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.05■□□□□ 0.32
CDH13P55290 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
CDH13P55290 AC022616.7-201ENST00000525383 220 ntBASIC17.05■□□□□ 0.32
CDH13P55290 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH13P55290 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.05■□□□□ 0.32
CDH13P55290 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.05■□□□□ 0.32
CDH13P55290 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms