Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CHRNA4P43681 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHRNA4P43681 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHRNA4P43681 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHRNA4P43681 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CHRNA4P43681 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
CHRNA4P43681 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.59■□□□□ 0.41
CHRNA4P43681 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CHRNA4P43681 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CHRNA4P43681 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
CHRNA4P43681 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.59■□□□□ 0.41
CHRNA4P43681 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CHRNA4P43681 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CHRNA4P43681 KLF4P1-201ENST00000412782 1185 ntBASIC17.59■□□□□ 0.41
CHRNA4P43681 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.59■□□□□ 0.41
CHRNA4P43681 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.59■□□□□ 0.41
CHRNA4P43681 NUS1P1-201ENST00000446295 882 ntBASIC17.59■□□□□ 0.41
CHRNA4P43681 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.59■□□□□ 0.41
CHRNA4P43681 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.59■□□□□ 0.41
CHRNA4P43681 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.59■□□□□ 0.41
CHRNA4P43681 CLEC4GP1-201ENST00000596555 870 ntBASIC17.59■□□□□ 0.41
CHRNA4P43681 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.59■□□□□ 0.41
CHRNA4P43681 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.59■□□□□ 0.41
CHRNA4P43681 AP000867.4-201ENST00000641616 219 ntBASIC17.59■□□□□ 0.41
CHRNA4P43681 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.59■□□□□ 0.41
CHRNA4P43681 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.59■□□□□ 0.41
CHRNA4P43681 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHRNA4P43681 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.58■□□□□ 0.41
CHRNA4P43681 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
CHRNA4P43681 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.41
CHRNA4P43681 AC148477.5-201ENST00000625164 1645 ntBASIC17.58■□□□□ 0.41
CHRNA4P43681 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHRNA4P43681 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.41
CHRNA4P43681 AC009336.1-201ENST00000608941 1553 ntBASIC17.58■□□□□ 0.41
CHRNA4P43681 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.58■□□□□ 0.41
CHRNA4P43681 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.58■□□□□ 0.41
CHRNA4P43681 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHRNA4P43681 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHRNA4P43681 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.58■□□□□ 0.41
CHRNA4P43681 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.58■□□□□ 0.4
CHRNA4P43681 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 SLC25A1P3-201ENST00000395415 828 ntBASIC17.58■□□□□ 0.4
CHRNA4P43681 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.58■□□□□ 0.4
CHRNA4P43681 KRT16P4-201ENST00000453883 522 ntBASIC17.58■□□□□ 0.4
CHRNA4P43681 AC132008.2-207ENST00000454517 770 ntBASIC17.58■□□□□ 0.4
CHRNA4P43681 STK19B-204ENST00000512515 211 ntBASIC17.58■□□□□ 0.4
CHRNA4P43681 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.58■□□□□ 0.4
CHRNA4P43681 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.58■□□□□ 0.4
CHRNA4P43681 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 AP001269.4-201ENST00000609611 512 ntBASIC17.58■□□□□ 0.4
CHRNA4P43681 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.58■□□□□ 0.4
CHRNA4P43681 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
CHRNA4P43681 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 AC116353.5-201ENST00000638148 1699 ntBASIC17.58■□□□□ 0.4
CHRNA4P43681 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHRNA4P43681 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.57■□□□□ 0.4
CHRNA4P43681 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHRNA4P43681 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.57■□□□□ 0.4
CHRNA4P43681 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHRNA4P43681 AC016396.2-201ENST00000562575 1417 ntBASIC17.57■□□□□ 0.4
CHRNA4P43681 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.57■□□□□ 0.4
CHRNA4P43681 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHRNA4P43681 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.57■□□□□ 0.4
CHRNA4P43681 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHRNA4P43681 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CHRNA4P43681 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
CHRNA4P43681 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.57■□□□□ 0.4
CHRNA4P43681 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHRNA4P43681 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHRNA4P43681 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHRNA4P43681 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CHRNA4P43681 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
CHRNA4P43681 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHRNA4P43681 ABCD1P5-201ENST00000445663 754 ntBASIC17.57■□□□□ 0.4
CHRNA4P43681 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms