Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
COL4A5P29400 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A5P29400 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 RN7SL692P-201ENST00000464677 288 ntBASIC20.69■□□□□ 0.9
COL4A5P29400 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A5P29400 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A5P29400 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 KRT8P23-201ENST00000560090 1207 ntBASIC20.69■□□□□ 0.9
COL4A5P29400 AL161645.1-201ENST00000622716 1255 ntBASIC20.69■□□□□ 0.9
COL4A5P29400 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A5P29400 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A5P29400 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL4A5P29400 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A5P29400 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A5P29400 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A5P29400 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 SPDYE7P-202ENST00000420373 878 ntBASIC20.68■□□□□ 0.9
COL4A5P29400 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 AL596325.1-201ENST00000563991 1082 ntBASIC20.68■□□□□ 0.9
COL4A5P29400 AP000842.3-202ENST00000569238 1080 ntBASIC20.68■□□□□ 0.9
COL4A5P29400 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC20.68■□□□□ 0.9
COL4A5P29400 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A5P29400 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A5P29400 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A5P29400 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 HLA-V-201ENST00000429037 534 ntBASIC20.67■□□□□ 0.9
COL4A5P29400 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A5P29400 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A5P29400 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A5P29400 AC109635.5-201ENST00000533593 962 ntBASIC20.67■□□□□ 0.9
COL4A5P29400 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A5P29400 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL4A5P29400 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A5P29400 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A5P29400 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
COL4A5P29400 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A5P29400 AL139327.4-201ENST00000612362 153 ntBASIC20.67■□□□□ 0.9
COL4A5P29400 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL4A5P29400 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A5P29400 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A5P29400 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A5P29400 AC100757.3-201ENST00000622361 1406 ntBASIC20.66■□□□□ 0.9
COL4A5P29400 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A5P29400 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A5P29400 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A5P29400 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A5P29400 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A5P29400 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A5P29400 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A5P29400 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A5P29400 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A5P29400 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A5P29400 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A5P29400 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COL4A5P29400 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A5P29400 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A5P29400 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL4A5P29400 AL008721.1-201ENST00000609964 604 ntBASIC20.66■□□□□ 0.9
COL4A5P29400 AL662799.1-202ENST00000614205 422 ntBASIC20.66■□□□□ 0.9
COL4A5P29400 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms