Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SMARCA1P28370 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SMARCA1P28370 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SMARCA1P28370 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 EGFEM1P-202ENST00000431685 1563 ntBASIC19.93■□□□□ 0.78
SMARCA1P28370 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SMARCA1P28370 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.93■□□□□ 0.78
SMARCA1P28370 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 PAWRP1-201ENST00000451083 565 ntBASIC19.93■□□□□ 0.78
SMARCA1P28370 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.93■□□□□ 0.78
SMARCA1P28370 AC079776.4-201ENST00000511039 504 ntBASIC19.93■□□□□ 0.78
SMARCA1P28370 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.93■□□□□ 0.78
SMARCA1P28370 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.93■□□□□ 0.78
SMARCA1P28370 GGTLC5P-201ENST00000617623 998 ntBASIC19.93■□□□□ 0.78
SMARCA1P28370 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.93■□□□□ 0.78
SMARCA1P28370 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.93■□□□□ 0.78
SMARCA1P28370 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.93■□□□□ 0.78
SMARCA1P28370 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCA1P28370 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCA1P28370 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SMARCA1P28370 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCA1P28370 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCA1P28370 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.92■□□□□ 0.78
SMARCA1P28370 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.92■□□□□ 0.78
SMARCA1P28370 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.92■□□□□ 0.78
SMARCA1P28370 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.92■□□□□ 0.78
SMARCA1P28370 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.92■□□□□ 0.78
SMARCA1P28370 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.92■□□□□ 0.78
SMARCA1P28370 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
SMARCA1P28370 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.92■□□□□ 0.78
SMARCA1P28370 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCA1P28370 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCA1P28370 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCA1P28370 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCA1P28370 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SMARCA1P28370 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.92■□□□□ 0.78
SMARCA1P28370 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SMARCA1P28370 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.91■□□□□ 0.78
SMARCA1P28370 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.91■□□□□ 0.78
SMARCA1P28370 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.91■□□□□ 0.78
SMARCA1P28370 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.91■□□□□ 0.78
SMARCA1P28370 RNA5SP415-201ENST00000517246 115 ntBASIC19.91■□□□□ 0.78
SMARCA1P28370 UNC93B6-202ENST00000528242 690 ntBASIC19.91■□□□□ 0.78
SMARCA1P28370 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCA1P28370 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SMARCA1P28370 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.9■□□□□ 0.78
SMARCA1P28370 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.9■□□□□ 0.78
SMARCA1P28370 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SMARCA1P28370 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.9■□□□□ 0.78
SMARCA1P28370 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SMARCA1P28370 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SMARCA1P28370 PP12613-201ENST00000424958 2230 ntBASIC19.9■□□□□ 0.78
SMARCA1P28370 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 RPL13AP23-201ENST00000480739 586 ntBASIC19.9■□□□□ 0.78
SMARCA1P28370 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.9■□□□□ 0.78
SMARCA1P28370 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.9■□□□□ 0.78
SMARCA1P28370 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.9■□□□□ 0.78
SMARCA1P28370 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SMARCA1P28370 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms