Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 AC060834.1-201ENST00000443027 2032 ntBASIC13.32□□□□□ -0.28
HLA-DMBP28068 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 UPK3BP1-201ENST00000428678 509 ntBASIC13.32□□□□□ -0.28
HLA-DMBP28068 ISCU-203ENST00000431221 799 ntTSL 2 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 MTCL1P1-201ENST00000446207 792 ntBASIC13.32□□□□□ -0.28
HLA-DMBP28068 AC112907.2-201ENST00000448639 330 ntBASIC13.32□□□□□ -0.28
HLA-DMBP28068 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 CBFB-203ENST00000561924 584 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 AC106886.4-201ENST00000623557 2502 ntBASIC13.31□□□□□ -0.28
HLA-DMBP28068 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 DAP-202ENST00000432074 1048 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 AC068472.1-201ENST00000474589 881 ntBASIC13.31□□□□□ -0.28
HLA-DMBP28068 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 TMED1-207ENST00000591695 809 ntTSL 5 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 GPR32P1-201ENST00000601788 811 ntBASIC13.31□□□□□ -0.28
HLA-DMBP28068 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 UBALD1-205ENST00000590891 2641 ntBASIC13.31□□□□□ -0.28
HLA-DMBP28068 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.31□□□□□ -0.28
HLA-DMBP28068 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DMBP28068 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.3□□□□□ -0.28
HLA-DMBP28068 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms