Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC3P19447 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ERCC3P19447 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.17■□□□□ 0.82
ERCC3P19447 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC3P19447 DNAJB3-202ENST00000449667 1266 ntBASIC20.17■□□□□ 0.82
ERCC3P19447 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.17■□□□□ 0.82
ERCC3P19447 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.17■□□□□ 0.82
ERCC3P19447 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC3P19447 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC3P19447 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ERCC3P19447 AC093677.2-201ENST00000600169 1863 ntBASIC20.17■□□□□ 0.82
ERCC3P19447 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.17■□□□□ 0.82
ERCC3P19447 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
ERCC3P19447 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
ERCC3P19447 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC3P19447 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
ERCC3P19447 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC3P19447 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.17■□□□□ 0.82
ERCC3P19447 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.16■□□□□ 0.82
ERCC3P19447 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.16■□□□□ 0.82
ERCC3P19447 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.16■□□□□ 0.82
ERCC3P19447 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
ERCC3P19447 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.16■□□□□ 0.82
ERCC3P19447 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.16■□□□□ 0.82
ERCC3P19447 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.16■□□□□ 0.82
ERCC3P19447 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.16■□□□□ 0.82
ERCC3P19447 CRYGEP-201ENST00000412192 528 ntBASIC20.16■□□□□ 0.82
ERCC3P19447 KLF4P1-201ENST00000412782 1185 ntBASIC20.16■□□□□ 0.82
ERCC3P19447 MCCD1P2-201ENST00000423228 335 ntBASIC20.16■□□□□ 0.82
ERCC3P19447 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.16■□□□□ 0.82
ERCC3P19447 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.16■□□□□ 0.82
ERCC3P19447 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.16■□□□□ 0.82
ERCC3P19447 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.16■□□□□ 0.82
ERCC3P19447 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.16■□□□□ 0.82
ERCC3P19447 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.16■□□□□ 0.82
ERCC3P19447 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.16■□□□□ 0.82
ERCC3P19447 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.16■□□□□ 0.82
ERCC3P19447 AC019129.2-201ENST00000609837 1235 ntBASIC20.16■□□□□ 0.82
ERCC3P19447 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.16■□□□□ 0.82
ERCC3P19447 AC068880.1-201ENST00000507289 2297 ntBASIC20.16■□□□□ 0.82
ERCC3P19447 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 NCF1C-201ENST00000438382 1427 ntBASIC20.16■□□□□ 0.82
ERCC3P19447 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.16■□□□□ 0.82
ERCC3P19447 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ERCC3P19447 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.15■□□□□ 0.82
ERCC3P19447 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
ERCC3P19447 AC003669.1-201ENST00000334569 611 ntBASIC20.15■□□□□ 0.82
ERCC3P19447 AC211486.1-202ENST00000416371 468 ntBASIC20.15■□□□□ 0.82
ERCC3P19447 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.15■□□□□ 0.82
ERCC3P19447 SIGLEC30P-201ENST00000455569 941 ntBASIC20.15■□□□□ 0.82
ERCC3P19447 AC108073.2-201ENST00000464002 357 ntBASIC20.15■□□□□ 0.82
ERCC3P19447 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.15■□□□□ 0.82
ERCC3P19447 AC211476.1-201ENST00000503899 468 ntBASIC20.15■□□□□ 0.82
ERCC3P19447 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.15■□□□□ 0.82
ERCC3P19447 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.15■□□□□ 0.82
ERCC3P19447 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.15■□□□□ 0.82
ERCC3P19447 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.15■□□□□ 0.82
ERCC3P19447 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.15■□□□□ 0.82
ERCC3P19447 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.15■□□□□ 0.82
ERCC3P19447 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.15■□□□□ 0.82
ERCC3P19447 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ERCC3P19447 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
ERCC3P19447 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms