Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
VIMP08670 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VIMP08670 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.58■□□□□ 0.41
VIMP08670 KRT8P7-201ENST00000533003 1432 ntBASIC17.58■□□□□ 0.41
VIMP08670 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
VIMP08670 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
VIMP08670 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.58■□□□□ 0.4
VIMP08670 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
VIMP08670 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.58■□□□□ 0.4
VIMP08670 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.58■□□□□ 0.4
VIMP08670 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.58■□□□□ 0.4
VIMP08670 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.58■□□□□ 0.4
VIMP08670 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.58■□□□□ 0.4
VIMP08670 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.58■□□□□ 0.4
VIMP08670 AL353708.3-201ENST00000610272 989 ntBASIC17.58■□□□□ 0.4
VIMP08670 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VIMP08670 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.58■□□□□ 0.4
VIMP08670 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VIMP08670 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.4
VIMP08670 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VIMP08670 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
VIMP08670 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.58■□□□□ 0.4
VIMP08670 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.58■□□□□ 0.4
VIMP08670 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VIMP08670 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
VIMP08670 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 LYSMD4-203ENST00000378904 2122 ntBASIC17.57■□□□□ 0.4
VIMP08670 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.57■□□□□ 0.4
VIMP08670 CYP2T1P-202ENST00000641596 2535 ntBASIC17.57■□□□□ 0.4
VIMP08670 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.57■□□□□ 0.4
VIMP08670 PAUPAR-201ENST00000630360 2965 ntBASIC17.57■□□□□ 0.4
VIMP08670 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 AC046185.3-201ENST00000623228 1824 ntBASIC17.57■□□□□ 0.4
VIMP08670 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VIMP08670 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.57■□□□□ 0.4
VIMP08670 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
VIMP08670 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
VIMP08670 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.57■□□□□ 0.4
VIMP08670 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.57■□□□□ 0.4
VIMP08670 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.57■□□□□ 0.4
VIMP08670 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
VIMP08670 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VIMP08670 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VIMP08670 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.56■□□□□ 0.4
VIMP08670 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 AL513523.2-202ENST00000427283 2040 ntBASIC17.56■□□□□ 0.4
VIMP08670 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.56■□□□□ 0.4
VIMP08670 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.56■□□□□ 0.4
VIMP08670 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 AC142086.2-201ENST00000569753 217 ntBASIC17.56■□□□□ 0.4
VIMP08670 AC233263.1-201ENST00000578059 224 ntBASIC17.56■□□□□ 0.4
VIMP08670 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.56■□□□□ 0.4
VIMP08670 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 AC092666.2-201ENST00000613287 246 ntBASIC17.56■□□□□ 0.4
VIMP08670 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VIMP08670 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms