Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.02■□□□□ 0.8
MBD3O95983 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.02■□□□□ 0.8
MBD3O95983 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3O95983 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3O95983 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC20.02■□□□□ 0.8
MBD3O95983 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3O95983 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3O95983 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MBD3O95983 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MBD3O95983 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
MBD3O95983 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.02■□□□□ 0.79
MBD3O95983 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MBD3O95983 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.01■□□□□ 0.79
MBD3O95983 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 AC012618.2-201ENST00000428058 849 ntBASIC20.01■□□□□ 0.79
MBD3O95983 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.01■□□□□ 0.79
MBD3O95983 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.01■□□□□ 0.79
MBD3O95983 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.01■□□□□ 0.79
MBD3O95983 AC026471.5-201ENST00000615068 467 ntBASIC20.01■□□□□ 0.79
MBD3O95983 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
MBD3O95983 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.01■□□□□ 0.79
MBD3O95983 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
MBD3O95983 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3O95983 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MBD3O95983 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
MBD3O95983 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20■□□□□ 0.79
MBD3O95983 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
MBD3O95983 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20■□□□□ 0.79
MBD3O95983 UNC93B2-201ENST00000285383 730 ntBASIC20■□□□□ 0.79
MBD3O95983 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
MBD3O95983 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20■□□□□ 0.79
MBD3O95983 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20■□□□□ 0.79
MBD3O95983 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20■□□□□ 0.79
MBD3O95983 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MBD3O95983 AL157888.1-201ENST00000631930 593 ntBASIC20■□□□□ 0.79
MBD3O95983 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20■□□□□ 0.79
MBD3O95983 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20■□□□□ 0.79
MBD3O95983 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
MBD3O95983 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MBD3O95983 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC20■□□□□ 0.79
MBD3O95983 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3O95983 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
MBD3O95983 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
MBD3O95983 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.99■□□□□ 0.79
MBD3O95983 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
MBD3O95983 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.99■□□□□ 0.79
MBD3O95983 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3O95983 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
MBD3O95983 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
MBD3O95983 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms