Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 FAM87A-204ENST00000613235 858 ntBASIC20.33■□□□□ 0.85
PRPF40AO75400 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
PRPF40AO75400 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC20.33■□□□□ 0.84
PRPF40AO75400 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC20.33■□□□□ 0.84
PRPF40AO75400 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PRPF40AO75400 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PRPF40AO75400 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.33■□□□□ 0.84
PRPF40AO75400 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.33■□□□□ 0.84
PRPF40AO75400 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PRPF40AO75400 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC20.32■□□□□ 0.84
PRPF40AO75400 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.32■□□□□ 0.84
PRPF40AO75400 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PRPF40AO75400 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.32■□□□□ 0.84
PRPF40AO75400 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 AL137013.1-201ENST00000432946 1228 ntBASIC20.32■□□□□ 0.84
PRPF40AO75400 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PRPF40AO75400 MIR3917-201ENST00000580971 93 ntBASIC20.32■□□□□ 0.84
PRPF40AO75400 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.32■□□□□ 0.84
PRPF40AO75400 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.32■□□□□ 0.84
PRPF40AO75400 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.32■□□□□ 0.84
PRPF40AO75400 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.32■□□□□ 0.84
PRPF40AO75400 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRPF40AO75400 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PRPF40AO75400 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.31■□□□□ 0.84
PRPF40AO75400 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC20.31■□□□□ 0.84
PRPF40AO75400 LINC01311-201ENST00000565162 1445 ntBASIC20.31■□□□□ 0.84
PRPF40AO75400 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.31■□□□□ 0.84
PRPF40AO75400 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.31■□□□□ 0.84
PRPF40AO75400 KRT18P57-201ENST00000443599 1254 ntBASIC20.31■□□□□ 0.84
PRPF40AO75400 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.31■□□□□ 0.84
PRPF40AO75400 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.31■□□□□ 0.84
PRPF40AO75400 AC092865.7-201ENST00000641832 219 ntBASIC20.31■□□□□ 0.84
PRPF40AO75400 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.31■□□□□ 0.84
PRPF40AO75400 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PRPF40AO75400 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
PRPF40AO75400 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRPF40AO75400 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRPF40AO75400 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.3■□□□□ 0.84
PRPF40AO75400 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRPF40AO75400 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC20.3■□□□□ 0.84
PRPF40AO75400 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.3■□□□□ 0.84
PRPF40AO75400 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.3■□□□□ 0.84
PRPF40AO75400 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.3■□□□□ 0.84
PRPF40AO75400 TERF1P1-201ENST00000311003 1181 ntBASIC20.3■□□□□ 0.84
PRPF40AO75400 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRPF40AO75400 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.3■□□□□ 0.84
PRPF40AO75400 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.3■□□□□ 0.84
PRPF40AO75400 PVRIG2P-201ENST00000435460 978 ntBASIC20.3■□□□□ 0.84
PRPF40AO75400 KRT18P65-201ENST00000439811 1286 ntBASIC20.3■□□□□ 0.84
PRPF40AO75400 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.3■□□□□ 0.84
PRPF40AO75400 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.3■□□□□ 0.84
PRPF40AO75400 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PRPF40AO75400 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PRPF40AO75400 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PRPF40AO75400 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.3■□□□□ 0.84
PRPF40AO75400 AC010331.1-201ENST00000611423 582 ntBASIC20.3■□□□□ 0.84
PRPF40AO75400 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.3■□□□□ 0.84
PRPF40AO75400 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms