Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.54■□□□□ 0.72
MSH4O15457 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.54■□□□□ 0.72
MSH4O15457 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 PCDHB18P-201ENST00000524813 2368 ntBASIC19.54■□□□□ 0.72
MSH4O15457 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH4O15457 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH4O15457 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH4O15457 SLC25A1P1-201ENST00000528351 927 ntBASIC19.54■□□□□ 0.72
MSH4O15457 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.54■□□□□ 0.72
MSH4O15457 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.54■□□□□ 0.72
MSH4O15457 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.54■□□□□ 0.72
MSH4O15457 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
MSH4O15457 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
MSH4O15457 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
MSH4O15457 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MSH4O15457 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MSH4O15457 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.53■□□□□ 0.72
MSH4O15457 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.53■□□□□ 0.72
MSH4O15457 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.53■□□□□ 0.72
MSH4O15457 AC136632.2-201ENST00000512891 861 ntBASIC19.53■□□□□ 0.72
MSH4O15457 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.53■□□□□ 0.72
MSH4O15457 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.53■□□□□ 0.72
MSH4O15457 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.53■□□□□ 0.72
MSH4O15457 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MSH4O15457 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
MSH4O15457 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MSH4O15457 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
MSH4O15457 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
MSH4O15457 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSH4O15457 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
MSH4O15457 AL590787.1-201ENST00000568856 1315 ntBASIC19.52■□□□□ 0.72
MSH4O15457 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.52■□□□□ 0.72
MSH4O15457 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.52■□□□□ 0.72
MSH4O15457 CROCCP2-202ENST00000412962 2773 ntBASIC19.52■□□□□ 0.72
MSH4O15457 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.52■□□□□ 0.72
MSH4O15457 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.52■□□□□ 0.72
MSH4O15457 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH4O15457 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.52■□□□□ 0.72
MSH4O15457 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH4O15457 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH4O15457 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH4O15457 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.52■□□□□ 0.72
MSH4O15457 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.52■□□□□ 0.72
MSH4O15457 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.52■□□□□ 0.72
MSH4O15457 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
MSH4O15457 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.52■□□□□ 0.72
MSH4O15457 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.52■□□□□ 0.72
MSH4O15457 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSH4O15457 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
MSH4O15457 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.52■□□□□ 0.71
MSH4O15457 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.52■□□□□ 0.71
MSH4O15457 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MSH4O15457 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 AC016396.2-201ENST00000562575 1417 ntBASIC19.51■□□□□ 0.71
MSH4O15457 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
MSH4O15457 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
MSH4O15457 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.51■□□□□ 0.71
MSH4O15457 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
MSH4O15457 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.51■□□□□ 0.71
MSH4O15457 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 SLC25A1P3-201ENST00000395415 828 ntBASIC19.51■□□□□ 0.71
MSH4O15457 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.51■□□□□ 0.71
MSH4O15457 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.51■□□□□ 0.71
MSH4O15457 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
MSH4O15457 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.51■□□□□ 0.71
MSH4O15457 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 MIR1199-201ENST00000621445 119 ntBASIC19.51■□□□□ 0.71
MSH4O15457 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.51■□□□□ 0.71
MSH4O15457 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
MSH4O15457 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.51■□□□□ 0.71
MSH4O15457 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MSH4O15457 GPR89P-201ENST00000407924 1495 ntBASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms