Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 KRT17P6-201ENST00000453795 1220 ntBASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 TOB2P1-201ENST00000469761 992 ntBASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 AL049757.1-201ENST00000616842 1596 ntBASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS9D1Q9Y2B5 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS9D1Q9Y2B5 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AC046185.3-201ENST00000623228 1824 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AL353593.2-201ENST00000602529 1483 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 TP73-AS1-210ENST00000637775 1455 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AP002383.4-201ENST00000442518 975 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 LINC00265-3P-201ENST00000447588 903 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 KRT18P35-201ENST00000510488 1269 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AP005901.3-202ENST00000581653 237 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 STK25P1-201ENST00000585406 838 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AL358472.4-201ENST00000633140 710 ntBASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS9D1Q9Y2B5 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms