Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.92■□□□□ 0.46
TDP1Q9NUW8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TDP1Q9NUW8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.92■□□□□ 0.46
TDP1Q9NUW8 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 AL139327.4-201ENST00000612362 153 ntBASIC17.91■□□□□ 0.46
TDP1Q9NUW8 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TDP1Q9NUW8 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 SNHG9-202ENST00000564014 471 ntBASIC17.9■□□□□ 0.46
TDP1Q9NUW8 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 AL078644.1-201ENST00000609881 752 ntBASIC17.9■□□□□ 0.46
TDP1Q9NUW8 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 AC007064.4-201ENST00000637740 555 ntBASIC17.9■□□□□ 0.46
TDP1Q9NUW8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TDP1Q9NUW8 AC025580.3-201ENST00000617932 1424 ntBASIC17.89■□□□□ 0.46
TDP1Q9NUW8 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TDP1Q9NUW8 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
TDP1Q9NUW8 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 AC254562.1-201ENST00000417586 456 ntBASIC17.89■□□□□ 0.45
TDP1Q9NUW8 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 CXCL1P1-201ENST00000502804 216 ntBASIC17.89■□□□□ 0.45
TDP1Q9NUW8 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 AC023141.13-201ENST00000604991 943 ntBASIC17.89■□□□□ 0.45
TDP1Q9NUW8 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 ELL2P1-201ENST00000413990 1906 ntBASIC17.89■□□□□ 0.45
TDP1Q9NUW8 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TDP1Q9NUW8 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms